Information for 15-WGHTTRAGWGDTKKAM (Motif 20)

C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
Reverse Opposite:
C A G T C A G T G T A C G T C A C G T A G C T A G T A C C G A T A T G C A C G T A G T C C G T A C T G A C G A T A G T C G C T A
p-value:1e-9
log p-value:-2.120e+01
Information Content per bp:1.622
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif35.5
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets60.2 +/- 25.5bp
Average Position of motif in Background54.0 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0004.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-WGHTTRAGWGDTKKAM
NTNNTTAAGTGGTTANN
 A C G T C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:WGHTTRAGWGDTKKAM
---TTGAGTGSTT---
 C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:WGHTTRAGWGDTKKAM
--CTTGAGTGGCT---
 C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-WGHTTRAGWGDTKKAM
NTNNTTAAGTGGNTNAN
 A C G T C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:WGHTTRAGWGDTKKAM
--CTYRAGTGSY----
 C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:WGHTTRAGWGDTKKAM
---TTRAGTGSYK---
 C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:WGHTTRAGWGDTKKAM
---TTAAGTGGN----
 C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:WGHTTRAGWGDTKKAM
---TTAAGTGGT----
 C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:WGHTTRAGWGDTKKAM
--BTBRAGTGSN----
 C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:WGHTTRAGWGDTKKAM
---TTAAGTGCTT---
 C G A T C T A G G C T A G A C T A C G T T C A G C G T A A T C G C G T A A C T G C G A T C G A T A C G T C A T G G T C A G T C A
A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T