Information for 8-GCCCATTGAG (Motif 9)

A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G
Reverse Opposite:
A T G C A C G T A T G C C G T A C G T A A C G T T A C G A C T G A C T G A G T C
p-value:1e-12
log p-value:-2.824e+01
Information Content per bp:1.860
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif30.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets27.2 +/- 21.6bp
Average Position of motif in Background57.5 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCCCATTGAG----
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCCCATTGAG
GGCCATTAAC
 A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCCCATTGAG-
--CCATTGTTC
 A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G A C G T
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCCCATTGAG-
-CCGATTGGCT
 A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G A C G T
A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCCATTGAG----
NNNCCATTGTGTNAN
 A C G T A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCCCATTGAG--
--CCATTGTTYB
 A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G A C G T A C G T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCCATTGAG
-CTCATTGTC
 A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCCCATTGAG
--CCWTTGTY
 A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCCATTGAG-
-NCCATTGTTC
 A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCCCATTGAG
--CCTTTGTT
 A C T G A G T C A G T C A T G C C G T A A C G T A C G T A T C G G T C A T A C G
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T