Information for 1-CCATTGTTCB (Motif 1)

A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G
Reverse Opposite:
T A G C C T A G T C G A C G T A A G T C C G T A C T G A G C A T T C A G T C A G
p-value:1e-133
log p-value:-3.079e+02
Information Content per bp:1.639
Number of Target Sequences with motif258.0
Percentage of Target Sequences with motif31.20%
Number of Background Sequences with motif2199.2
Percentage of Background Sequences with motif4.67%
Average Position of motif in Targets51.6 +/- 21.8bp
Average Position of motif in Background50.4 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:1
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGTTCB
NCCATTGTTY-
 A C G T A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-CCATTGTTCB
NCCATTGTTC-
 A C G T A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CCATTGTTCB
CCATTGTTYB
 A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CCATTGTTCB
CCATTGTTNY
 A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.95
Offset:0
Orientation:forward strand
Alignment:CCATTGTTCB
CCATTGTTC-
 A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.95
Offset:0
Orientation:forward strand
Alignment:CCATTGTTCB
CCWTTGTY--
 A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCATTGTTCB
CCWTTGTYYB
 A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCATTGTTCB
CCATTGTTTT
 A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---CCATTGTTCB----
CNNNTATTGTTCNNNNN
 A C G T A C G T A C G T A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----CCATTGTTCB--
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T