Information for 3-CCAGGCAGAARKC (Motif 9)

A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C
Reverse Opposite:
A C T G G T A C A G T C C G A T A C G T A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G
p-value:1e-10
log p-value:-2.390e+01
Information Content per bp:1.919
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.7 +/- 11.9bp
Average Position of motif in Background54.4 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCAGGCAGAARKC
CCAGACAG-----
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCAGGCAGAARKC
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCAGGCAGAARKC-
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCAGGCAGAARKC
---AACAGATGGC
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCAGGCAGAARKC----
AAGGCCAGATGGTCCGG
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C A C G T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGCAGAARKC
TGCCCAGNHW------
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCAGGCAGAARKC
TTCCNGGAAG-----
 A C G T A C G T A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C
G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCAGGCAGAARKC
CCAGGAACAG---
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCAGGCAGAARKC
CCAGACRSVB---
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCAGGCAGAARKC
BCAGACWA-----
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A A T C G C G T A C G T A C T A G A C T G A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T