Information for 11-TGTCKGGRCCSCA (Motif 33)

A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A
Reverse Opposite:
A C G T A C T G T A C G A C T G A C T G A G C T A G T C A G T C G T A C A C T G C G T A A G T C C G T A
p-value:1e-5
log p-value:-1.373e+01
Information Content per bp:1.889
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.2 +/- 26.4bp
Average Position of motif in Background41.4 +/- 35.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGTCKGGRCCSCA
CTGTCTGG------
 A C G T A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCKGGRCCSCA
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGTCKGGRCCSCA
VBSYGTCTGG------
 A C G T A C G T A C G T A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGTCKGGRCCSCA
---GTGGGCCCCA
 A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A
A C G T A C G T A C G T T A C G G A C T A C T G A C T G C T A G A T G C A G T C A G T C A G T C C T G A

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGTCKGGRCCSCA
TGTCTAGACG---
 A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGTCKGGRCCSCA----
TGTCGTGACCCCTTAAT
 A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A A C G T A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGTCKGGRCCSCA
TWGTCTGV------
 A C G T A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGTCKGGRCCSCA
WDNCTGGGCA---
 A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGTCKGGRCCSCA--
TGCCTGCGYCMCCTT
 A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A A C G T A C G T
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TGTCKGGRCCSCA
GGGCGGGACC---
 A C G T A C T G A C G T G T A C A C T G A C T G A C T G C T G A A G T C A G T C A T C G A G T C C G T A
A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C A C G T A C G T A C G T