Information for 1-TYYCTAATSCCCG (Motif 1)

A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G
Reverse Opposite:
A T G C A C T G A C T G A C T G A T C G C G T A A G C T A C G T C G T A A T C G C T G A C T G A C T G A
p-value:1e-12
log p-value:-2.814e+01
Information Content per bp:1.805
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.6 +/- 25.4bp
Average Position of motif in Background62.9 +/- 7.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TYYCTAATSCCCG-
GNNAGCTAATCCCCCN
 A C G T A C G T A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TYYCTAATSCCCG
--GCTAATCCCC-
 A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TYYCTAATSCCCG
--CCTAATCCGC-
 A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G
A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TYYCTAATSCCCG---
NTTGTTAATCCCTCTNN
 A C G T A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.65
Offset:6
Orientation:forward strand
Alignment:TYYCTAATSCCCG--
------ATGCCCACC
 A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

MZF1/MA0056.1/Jaspar

Match Rank:6
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:TYYCTAATSCCCG
-------TCCCCA
 A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

PH0122.1_Obox2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TYYCTAATSCCCG---
ATAGTTAATCCCCCTCA
 A C G T A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

Crx/MA0467.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TYYCTAATSCCCG-
---CTAATCCTCTT
 A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G A C G T
A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TYYCTAATSCCCG
--CTTAATCCC--
 A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TYYCTAATSCCCG---
ATAGTTAATCCCCCNNA
 A C G T A G C T A G C T A G C T A T G C G C A T C G T A C T G A A C G T A T G C A G T C A G T C A G T C A T C G A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A