Information for 4-BCAGGTCACTGGGCAC (Motif 5)

A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C
Reverse Opposite:
C T A G C G A T A T C G A G T C A T G C A G T C C G T A A T C G A C G T A C T G C G T A A T G C A G T C A C G T A C T G T C G A
p-value:1e-11
log p-value:-2.708e+01
Information Content per bp:1.809
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 26.7bp
Average Position of motif in Background45.5 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:BCAGGTCACTGGGCAC
--AGGTCANTGACCTN
 A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C
A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:BCAGGTCACTGGGCAC
GTAGGTCACTGGGTCA
 A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:BCAGGTCACTGGGCAC
-----WDNCTGGGCA-
 A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:BCAGGTCACTGGGCAC
-GAGGTCAAAGGTCA-
 A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:BCAGGTCACTGGGCAC
--AGGTCA--------
 A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:BCAGGTCACTGGGCAC
-AAGGTCAC-------
 A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:BCAGGTCACTGGGCAC
AGGGGTCAGAGGTCA-
 A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:BCAGGTCACTGGGCAC----
NGAGGTCANNGAGTTCANNN
 A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:BCAGGTCACTGGGCAC
TRAGGTCA--------
 A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:BCAGGTCACTGGGCAC
VCAGGTRDRY------
 A C G T A G T C C G T A A C T G A T C G A C G T G T A C C G T A A T G C A C G T A C T G A T C G T C A G A T G C C G T A A G T C
T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T