Information for 3-CGCTGACCTGGGA (Motif 4)

A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A T G C C G T A A C T G A C T G C G A T A G T C C G T A A C T G A T G C A C T G
p-value:1e-13
log p-value:-3.169e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.4 +/- 17.8bp
Average Position of motif in Background44.7 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CGCTGACCTGGGA
--CTGACCTTTG-
 A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCTGGGA
---TGACCTYA--
 A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCTGGGA
---TGACCTTGAV
 A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A
A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCTGGGA
---TGACCT----
 A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CGCTGACCTGGGA---
-GCTGACCTTGAACTN
 A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A A C G T A C G T A C G T
A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCTGGGA
---TGACCTTGAN
 A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A
A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CGCTGACCTGGGA
--NTGACCTTGA-
 A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCTGGGA
---TGACCTTGAT
 A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGCTGACCTGGGA--
NNNNATGACCTTGANTN
 A C G T A C G T A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

Esrra/MA0592.2/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGCTGACCTGGGA
--ATGACCTTGAA
 A G T C A T C G G T A C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C T G A C T G C G T A
A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A