Information for 20-GTCACAGGGTCACCCA (Motif 31)

A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A
Reverse Opposite:
C G A T A C T G A C T G A T C G A C G T A C T G G T C A A G T C A G T C A T G C A C G T A C T G A C G T A C T G C G T A A T G C
p-value:1e-7
log p-value:-1.682e+01
Information Content per bp:1.918
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.0 +/- 27.7bp
Average Position of motif in Background41.7 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTCACAGGGTCACCCA
GTAGGTCACTGGGTCA----
 A C G T A C G T A C G T A C G T A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTCACAGGGTCACCCA
CGCGCCGGGTCACGTA
 A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

Rarg/MA0859.1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTCACAGGGTCACCCA
AAGGTCAAAAGGTCAA---
 A C G T A C G T A C G T A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTCACAGGGTCACCCA
AAAGGTCAAAAGGTCA----
 A C G T A C G T A C G T A C G T A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTCACAGGGTCACCCA
GAGGTCAAAAGGTCA----
 A C G T A C G T A C G T A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTCACAGGGTCACCCA
GTCACATGAY------
 A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A
T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTCACAGGGTCACCCA-
NTNNNGGGGTCANGNNN
 A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

RARA/MA0729.1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GTCACAGGGTCACCCA
GAGGTCAAAAGGTCAATG-
 A C G T A C G T A C G T A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GTCACAGGGTCACCCA
----CAAGGHCANV--
 A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GTCACAGGGTCACCCA
---TCAAGGTCAN---
 A T C G A C G T A G T C C G T A A G T C C G T A A T C G C T A G A C T G A C G T A G T C C G T A T A G C A G T C A G T C C G T A
A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T