Information for 10-TCAGGVCBDGGTCABG (Motif 21)

A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G
Reverse Opposite:
G T A C T C G A A C G T A C T G C G T A A G T C A G T C G A C T T C G A A C T G A G T C A G T C A T G C A C G T A C T G G T C A
p-value:1e-9
log p-value:-2.226e+01
Information Content per bp:1.804
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 33.1bp
Average Position of motif in Background36.7 +/- 10.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TCAGGVCBDGGTCABG
RGGTCADNNAGAGGTCAV-
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TCAGGVCBDGGTCABG--
--AGAGCGGGGTCAAGTA
 A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G A C G T A C G T
A C G T A C G T G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

RARA::RXRA/MA0159.1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TCAGGVCBDGGTCABG
AGGTCACGGAGAGGTCA--
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.66
Offset:8
Orientation:forward strand
Alignment:TCAGGVCBDGGTCABG
--------AGGTCA--
 A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCAGGVCBDGGTCABG
AGGTCATGCAAAGGTCA--
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TCAGGVCBDGGTCABG--
--CGCGCCGGGTCACGTA
 A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G A C G T A C G T
A C G T A C G T T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TCAGGVCBDGGTCABG
--AGGTCAAGGTCA--
 A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.62
Offset:6
Orientation:forward strand
Alignment:TCAGGVCBDGGTCABG
------AGRGGTCA--
 A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCAGGVCBDGGTCABG
AGGTCAACTAAAGGTCA--
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.62
Offset:6
Orientation:forward strand
Alignment:TCAGGVCBDGGTCABG
------TRAGGTCA--
 A C G T A G T C C G T A A T C G A C T G T A C G A G T C A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T