Information for 15-VAGCGTCCGTGCA (Motif 28)

T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A A G T C A C T G A C T G C G T A A G T C A T C G G T A C A C G T A C G T
p-value:1e-9
log p-value:-2.250e+01
Information Content per bp:1.898
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 21.8bp
Average Position of motif in Background40.5 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:VAGCGTCCGTGCA
CAACGTCCGCGG-
 T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:VAGCGTCCGTGCA
--GGGTACGTGC-
 T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A
A C G T A C G T C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:VAGCGTCCGTGCA
----GGACGTGC-
 T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:VAGCGTCCGTGCA
----RTACGTGC-
 T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:VAGCGTCCGTGCA-
----TTGCGTGCVA
 T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.59
Offset:5
Orientation:forward strand
Alignment:VAGCGTCCGTGCA
-----TACGTGCV
 T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

PB0026.1_Gm397_1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:VAGCGTCCGTGCA------
--NNGTATGTGCACATNNN
 T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:VAGCGTCCGTGCA
--GAGSCCGAGC-
 T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A
A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:VAGCGTCCGTGCA------
--NTNTATGTGCACATNNN
 T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PB0199.1_Zfp161_2/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:VAGCGTCCGTGCA------
-----GCCGCGCAGTGCGT
 T A C G C G T A A C T G A T G C A C T G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T