Information for 2-GKCAACBTKA (Motif 19)

T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A
Reverse Opposite:
C G A T G T C A T G C A T C G A T A C G A G C T A C G T C A T G T G C A A T G C
p-value:1e-10
log p-value:-2.502e+01
Information Content per bp:1.517
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif4.33%
Number of Background Sequences with motif391.6
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets48.5 +/- 28.9bp
Average Position of motif in Background51.5 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GKCAACBTKA
--CAAGCTT-
 T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A
A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GKCAACBTKA
-TCAGTCTT-
 T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A
A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GKCAACBTKA
TTGCCAAG----
 A C G T A C G T T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GKCAACBTKA
CGTGCCAAG----
 A C G T A C G T A C G T T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GKCAACBTKA
TGCCAA-----
 A C G T T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GKCAACBTKA----
GGTCANNGTGACCTN
 A C G T T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A A C G T A C G T A C G T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GKCAACBTKA
BTCAAGGTCA
 T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Mafb/MA0117.2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GKCAACBTKA-
NGTCAGCANTTT
 A C G T T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A A C G T
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GKCAACBTKA
AAGGCAAGTGT-
 A C G T A C G T T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GKCAACBTKA-
---AACCGANA
 T A C G A C G T G T A C T G C A T C G A A T G C A G C T A C G T C A G T G C T A A C G T
A C G T A C G T A C G T C G T A C G T A T A G C A G T C C T A G G C T A G T A C G C T A