Information for 3-AGGRARCGCAGCCGCC (Motif 2)

C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C
Reverse Opposite:
A T C G C A T G A T G C T C A G A T C G A T G C A C G T A C T G A G T C A C T G A G T C A C G T A G C T A G T C G T A C A G C T
p-value:1e-18
log p-value:-4.283e+01
Information Content per bp:1.748
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.9 +/- 27.3bp
Average Position of motif in Background51.3 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.70
Offset:6
Orientation:forward strand
Alignment:AGGRARCGCAGCCGCC
------CGCAGCTGCG
 C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AGGRARCGCAGCCGCC
-----NNACAGCTGC-
 C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C
A C G T A C G T A C G T A C G T A C G T C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T

Myog/MA0500.1/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:AGGRARCGCAGCCGCC
-----NNGCAGCTGTC
 C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.60
Offset:7
Orientation:forward strand
Alignment:AGGRARCGCAGCCGCC-
-------NCAGCTGCTG
 C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Myod1/MA0499.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:AGGRARCGCAGCCGCC---
------TGCAGCTGTCCCT
 C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:6
Score:0.60
Offset:6
Orientation:forward strand
Alignment:AGGRARCGCAGCCGCC--
------AGCAGCTGCTNN
 C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGGRARCGCAGCCGCC
----NNVVCAGCTGBN
 C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C
A C G T A C G T A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

NRF1/MA0506.1/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGGRARCGCAGCCGCC
----TGCGCAGGCGC-
 C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C
A C G T A C G T A C G T A C G T A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AGGRARCGCAGCCGCC
-----NAACAGCTGT-
 C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C
A C G T A C G T A C G T A C G T A C G T T C A G T G C A T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:10
Score:0.59
Offset:6
Orientation:forward strand
Alignment:AGGRARCGCAGCCGCC
------AGCAGCTGCT
 C T G A A C T G C T A G C T G A G T C A C T A G A G T C C T A G A G T C C G T A A T C G A T G C A G T C A T C G G A T C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T