Information for 4-CAGCAGGGGATCTGTG (Motif 4)

G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
Reverse Opposite:
A G T C G T C A T A G C C G T A A C T G G T C A A C G T A T G C A T G C A G T C A G T C A C G T A T C G A G T C C G A T A C T G
p-value:1e-13
log p-value:-3.187e+01
Information Content per bp:1.829
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.2 +/- 23.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGGGATCTGTG
CACAGCAGGGGG------
 A C G T A C G T G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGGGATCTGTG
DCHCAGCAGGRGGCC----
 A C G T A C G T A C G T G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGGGGATCTGTG
CACAGCGGGGGGTC----
 A C G T A C G T G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGGGATCTGTG
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGGGATCTGTG
NCGCAGCGGGGGGTC----
 A C G T A C G T A C G T G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGGGATCTGTG
NCNCAGCGGGGGGTC----
 A C G T A C G T A C G T G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGGGATCTGTG
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGGGATCTGTG
DCTCAGCAGG---------
 A C G T A C G T A C G T G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGGGATCTGTG
GAGCACAGCAGGACA------
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAGCAGGGGATCTGTG
----TGGGGA------
 G T A C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A T C G C G T A A C G T A G T C A C G T A C T G A C G T C T A G
A C G T A C G T A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T