Information for 18-CACACATAATGCCAGC (Motif 27)

A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C
Reverse Opposite:
A C T G T A G C C G A T C T A G A T C G A G T C G T C A C G A T A C G T T C G A C G A T A C T G C G A T A C T G G A C T A T C G
p-value:1e-8
log p-value:-2.027e+01
Information Content per bp:1.760
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.8 +/- 15.1bp
Average Position of motif in Background37.0 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.61
Offset:8
Orientation:forward strand
Alignment:CACACATAATGCCAGC-
--------ATGCCAACC
 A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CACACATAATGCCAGC-----
-----ACTATGCCAACCTACC
 A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CACACATAATGCCAGC--
--------ATGCCAGACN
 A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CACACATAATGCCAGC
-------CGTGCCAAG
 A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:CACACATAATGCCAGC
---------TGCCAA-
 A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CACACATAATGCCAGC
CCACACAGCAGGAGA--
 A C G T A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CACACATAATGCCAGC
------CAAGGHCANV
 A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CACACATAATGCCAGC
GAGCACAGCAGGACA--
 A C G T A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CACACATAATGCCAGC
ATTTCCCAGVAKSCY---
 A C G T A C G T A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CACACATAATGCCAGC
CCACACAGCAGGAGA--
 A C G T A T G C C T G A A G T C G C T A T G A C C G T A A G C T G T C A C G T A A C G T A C T G A T G C A G T C C G T A A T C G G T A C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T