Information for 17-TTAGGTCACG (Motif 41)

A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G
Reverse Opposite:
A G T C A T C G C A G T T A C G T C G A T A G C A G T C G A C T C G T A T G C A
p-value:1e-8
log p-value:-1.987e+01
Information Content per bp:1.674
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.05%
Number of Background Sequences with motif342.9
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets49.5 +/- 27.6bp
Average Position of motif in Background46.5 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TTAGGTCACG
-AAGGTCAC-
 A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TTAGGTCACG
--AGGTCA--
 A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TTAGGTCACG
TRAGGTCA--
 A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TTAGGTCACG
AAYTAGGTCA--
 A C G T A C G T A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TTAGGTCACG
TATAAGTAGGTCAA-
 A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTAGGTCACG
ATCAAGGTCA--
 A C G T A C G T A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TTAGGTCACG-
---AGTCACGC
 A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G A C G T
A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

USF1/MA0093.2/Jaspar

Match Rank:8
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TTAGGTCACG----
---GGTCACGTGGC
 A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C

Mitf/MA0620.1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TTAGGTCACG---
---GGTCACGTGG
 A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G

Arntl/MA0603.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TTAGGTCACG---
---GGTCACGTGC
 A C G T G C A T C T G A T A C G A T C G A G C T A T G C G T C A A T G C T C A G A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C