Information for 3-ATGCAAATGAAGTCKC (Motif 4)

C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
Reverse Opposite:
A C T G T G A C A C T G G T C A A G T C A C G T A C G T A G T C G C T A C G A T A C G T A G C T A C T G G T A C C G T A A C G T
p-value:1e-18
log p-value:-4.212e+01
Information Content per bp:1.788
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.1 +/- 18.9bp
Average Position of motif in Background15.9 +/- 2.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAATGAAGTCKC
ATATGCAAATNNN-----
 A C G T A C G T C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ATGCAAATGAAGTCKC
WATGCAAATGAG-----
 A C G T C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATGAAGTCKC
TTGTATGCAAATTAGA----
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATGAAGTCKC
TTGTATGCAAATTAGA----
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATGAAGTCKC
TTGTATGCAAATTAGA----
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ATGCAAATGAAGTCKC
TATGCWAATBAV-----
 A C G T C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAATGAAGTCKC
TTATGCAAAT--------
 A C G T A C G T C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGCAAATGAAGTCKC
ATATGCAAAT--------
 A C G T A C G T C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU1F1/MA0784.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATGCAAATGAAGTCKC
AATATGCAAATTAG-----
 A C G T A C G T A C G T C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGCAAATGAAGTCKC
TATGCAAAT--------
 A C G T C G T A C G A T A C T G A G T C C T G A C G T A C G T A C A G T C T A G C G T A G T C A C T A G A C G T A G T C A C G T A G T C
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T