Information for 2-ACRGCASSGRWCCWSY (Motif 3)

C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
Reverse Opposite:
C T A G A T C G C G T A A C T G A C T G C G A T A G T C A T G C A T G C A T C G A C G T A C T G A G T C A G T C A C T G A C G T
p-value:1e-18
log p-value:-4.212e+01
Information Content per bp:1.804
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.1 +/- 34.9bp
Average Position of motif in Background77.4 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACRGCASSGRWCCWSY
DCHCAGCAGGRGGCC---
 A C G T A C G T C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ACRGCASSGRWCCWSY
CACAGCAGGGGG-----
 A C G T C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ACRGCASSGRWCCWSY
CCACACAGCAGGAGA-----
 A C G T A C G T A C G T A C G T C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ACRGCASSGRWCCWSY
CCACACAGCAGGAGA-----
 A C G T A C G T A C G T A C G T C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-ACRGCASSGRWCCWSY
CACAGCGGGGGGTC---
 A C G T C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----ACRGCASSGRWCCWSY
GAGCACAGCAGGACA-----
 A C G T A C G T A C G T A C G T C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--ACRGCASSGRWCCWSY
DCTCAGCAGG--------
 A C G T A C G T C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-ACRGCASSGRWCCWSY
CACAGN-----------
 A C G T C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:ACRGCASSGRWCCWSY
ACGTCA----------
 C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--ACRGCASSGRWCCWSY
NCNCAGCGGGGGGTC---
 A C G T A C G T C G T A A G T C C T A G A C T G A G T C G T C A A T G C A T C G A T C G C T A G C G T A T G A C A G T C C G A T A T G C A G T C
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T