Information for 11-AGCCYTCSACTGT (Motif 20)

C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A C T G G A C T A T C G A C T G C G T A C T G A A C T G A C T G A G T C A G C T
p-value:1e-12
log p-value:-2.844e+01
Information Content per bp:1.913
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.3 +/- 36.4bp
Average Position of motif in Background52.0 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.53
Offset:8
Orientation:forward strand
Alignment:AGCCYTCSACTGT-
--------GCTGTG
 C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

ZNF354C/MA0130.1/Jaspar

Match Rank:2
Score:0.52
Offset:4
Orientation:forward strand
Alignment:AGCCYTCSACTGT
----ATCCAC---
 C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGCCYTCSACTGT
CAGCC---------
 A C G T C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AGCCYTCSACTGT---
------CCATTGTTYB
 C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGCCYTCSACTGT-
GACCCCCCGCTGTG
 C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.50
Offset:6
Orientation:forward strand
Alignment:AGCCYTCSACTGT-
------CCTTTGTT
 C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.50
Offset:5
Orientation:forward strand
Alignment:AGCCYTCSACTGT--
-----NCCATTGTTC
 C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----AGCCYTCSACTGT---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.50
Offset:6
Orientation:forward strand
Alignment:AGCCYTCSACTGT--
------CCATTGTTC
 C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------AGCCYTCSACTGT-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A G T C A G T C A G C T C G A T A G T C A T G C C G T A A G T C A C G T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C