Information for 8-AGACATCAAACAT (Motif 16)

C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G C T A C G T A C G T A C T G C G T A A C G T A C T G G A C T A G T C C G A T
p-value:1e-13
log p-value:-3.021e+01
Information Content per bp:1.921
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.2 +/- 25.2bp
Average Position of motif in Background64.4 +/- 0.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGACATCAAACAT--
TCACCCATCAATAAACA
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGACATCAAACAT
-GYCATCMATCAT
 C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AGACATCAAACAT-
--CCATCAATCAAA
 C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T A C G T
A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGACATCAAACAT
RGCCATYAATCA-
 C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGACATCAAACAT---
GAAGATCAATCACTTA
 C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGACATCAAACAT
--TCATCAATCA-
 C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGACATCAAACAT
-GCCATAAATCA-
 C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGACATCAAACAT---
GAAGATCAATCACTAA
 C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGACATCAAACAT
GGCCATAAATCA-
 C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGACATCAAACAT-
AAAGATCAAAGGAA
 C G T A A C T G C G T A A G T C C G T A C G A T A G T C C G T A C G T A C T G A A G T C C G T A A C G T A C G T
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A