Information for 2-AGGCTCACYTTGACYT (Motif 3)

C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T
Reverse Opposite:
C T G A C T A G C T A G C G A T G T A C C G T A C T G A T C A G C A T G G C A T A C T G C G T A T A C G A G T C A G T C C G A T
p-value:1e-16
log p-value:-3.879e+01
Information Content per bp:1.746
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.6 +/- 29.1bp
Average Position of motif in Background61.6 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ESR1/MA0112.3/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGCTCACYTTGACYT-
AAGGTCACGGTGACCTG
 C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T A C G T
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AGGCTCACYTTGACYT-
--GGTCANNGTGACCTN
 C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T A C G T
A C G T A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AGGCTCACYTTGACYT
----TGACCTTGACCT
 C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T
A C G T A C G T A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:AGGCTCACYTTGACYT
----TGACCTTGACCT
 C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T
A C G T A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

ESR2/MA0258.2/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGGCTCACYTTGACYT
-AGGNCANNGTGACCT
 C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T
A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

PPARG/MA0066.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGGCTCACYTTGACYT--
AGTAGGTCACNGTGACCTAC
 A C G T A C G T C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T A C G T A C G T
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGGCTCACYTTGACYT-
--GCTGACCTTGAACTN
 C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T A C G T
A C G T A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Nr2e1/MA0676.1/Jaspar

Match Rank:8
Score:0.59
Offset:9
Orientation:reverse strand
Alignment:AGGCTCACYTTGACYT--
---------TTGACTTTT
 C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

PRDM1/MA0508.1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGGCTCACYTTGACYT---
----TCACTTTCACTTTCN
 C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGGCTCACYTTGACYT
----TNCCTTTGATGT
 C G T A A C T G C T A G A T G C C G A T A G T C C G T A G A T C A G T C A G C T A C G T A C T G G C T A G A T C G A T C A G C T
A C G T A C G T A C G T A C G T C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T