Information for 6-CAAGTGCCAG (Motif 20)

G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G
Reverse Opposite:
G T A C C G A T T C A G C A T G A T G C C G T A A G T C C A G T C A G T C A T G
p-value:1e-10
log p-value:-2.424e+01
Information Content per bp:1.687
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif6.46%
Number of Background Sequences with motif1028.3
Percentage of Background Sequences with motif2.10%
Average Position of motif in Targets50.1 +/- 26.3bp
Average Position of motif in Background51.2 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CAAGTGCCAG-
--CGTGCCAAG
 G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.74
Offset:3
Orientation:forward strand
Alignment:CAAGTGCCAG--
---ATGCCAACC
 G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CAAGTGCCAG-
---TTGCCAAG
 G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CAAGTGCCAG--
--GGTGCCAAGT
 G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:CAAGTGCCAG
----TGCCAA
 G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CAAGTGCCAG
CCAACTGCCA-
 A C G T G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T

HES5/MA0821.1/Jaspar

Match Rank:7
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CAAGTGCCAG
CGGCACGTGCCA-
 A C G T A C G T A C G T G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G
G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A A C G T

HES7/MA0822.1/Jaspar

Match Rank:8
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CAAGTGCCAG
TGGCACGTGCCA-
 A C G T A C G T A C G T G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G
G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CAAGTGCCAG--
CGACCAACTGCCATGC
 A C G T A C G T A C G T A C G T G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G A C G T A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CAAGTGCCAG--
---ATGCCCACC
 G T A C G T C A G T C A T C A G C G A T T A C G G T A C A G T C C G T A C A T G A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C