Information for 6-AGCCAATCAGAGC (Motif 6)

C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C
Reverse Opposite:
A T C G A G T C C G A T A G T C A G C T C A T G C G T A A G C T A C G T A C T G A C T G A T G C A C G T
p-value:1e-16
log p-value:-3.736e+01
Information Content per bp:1.761
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.11%
Number of Background Sequences with motif174.4
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets42.9 +/- 25.9bp
Average Position of motif in Background46.5 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:AGCCAATCAGAGC
AGCCAATCGG---
 C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.84
Offset:-5
Orientation:forward strand
Alignment:-----AGCCAATCAGAGC
AAATGGACCAATCAG---
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATCAGAGC
ACTAGCCAATCA----
 A C G T A C G T A C G T C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATCAGAGC---
TGGACCAATCAGCACTCT
 A C G T A C G T C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AGCCAATCAGAGC
--CCAATCAA---
 C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGCCAATCAGAGC
TGCCAA-------
 C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATCAGAGC
CGTGCCAAG------
 A C G T A C G T C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AGCCAATCAGAGC
---AAATCACTGC
 C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C
A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

Gfi1/MA0038.1/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGCCAATCAGAGC
--CAAATCACTG-
 C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGCCAATCAGAGC-
CACCGCTAATTAGNNGN
 A C G T A C G T A C G T C G T A A T C G A G T C G T A C C G T A C T G A A C G T G A T C C T G A C T A G G C T A T C A G T A G C A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T