Information for 3-GRGWTCAGGACCAGGG (Motif 6)

C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G
Reverse Opposite:
A G T C A G T C T G A C A C G T A C T G A C T G A C G T A G T C A G T C A C G T A C T G G T C A C G A T A G T C A G C T G T A C
p-value:1e-14
log p-value:-3.282e+01
Information Content per bp:1.768
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.1 +/- 25.0bp
Average Position of motif in Background45.3 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GRGWTCAGGACCAGGG--------
---TTCAGCACCATGGACAGCGCC
 C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GRGWTCAGGACCAGGG--------
----TCAGCACCATGGACAGCTCC
 C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

POL011.1_XCPE1/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GRGWTCAGGACCAGGG
--GGGCGGGACC----
 C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G
A C G T A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GRGWTCAGGACCAGGG---
---NNAGGGACAAGGGCNC
 C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GRGWTCAGGACCAGGG
---ANCAGGATGT---
 C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G
A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GRGWTCAGGACCAGGG
-NGNTCTAGAACCNGV
 C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G
A C G T C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:7
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:GRGWTCAGGACCAGGG
-GGTTAGAGACCT---
 C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G
A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:GRGWTCAGGACCAGGG-
-------GAACAATGGN
 C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:GRGWTCAGGACCAGGG
-------TGACCT---
 C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:10
Score:0.47
Offset:6
Orientation:forward strand
Alignment:GRGWTCAGGACCAGGG
------AAGACCCYYN
 C A T G C T G A C T A G C G T A A C G T A G T C G T C A A C T G C T A G C G T A A G T C A G T C T C G A A C T G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C