Information for 9-AGCAGCAAGCCAC (Motif 13)

C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C
Reverse Opposite:
A C T G C G A T A C T G A C T G A T G C A G C T A C G T A C T G A G T C A C G T A C T G A G T C A C G T
p-value:1e-10
log p-value:-2.482e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.4 +/- 17.0bp
Average Position of motif in Background7.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGCAGCAAGCCAC
TGGCACCATGCCAA
 A C G T C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGCAAGCCAC
TGGCAGNCTGCCAG
 A C G T C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCAGCAAGCCAC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCAGCAAGCCAC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCAGCAAGCCAC
GAGCACAGCAGGACA-
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGCAAGCCAC
DCHCAGCAGGRGGCC--
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGCAGCAAGCCAC
ANCAGGAAGT---
 C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C
C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGCAAGCCAC
DCTCAGCAGG----
 A C G T C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGCAGCAAGCCAC---
----SSAATCCACANN
 C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AGCAGCAAGCCAC---
------AAACCACANN
 C G T A A C T G A G T C C G T A A C T G G T A C C G T A C T G A A T C G A G T C A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A