Information for 19-ATGCTAAGTAAAT (Motif 36)

C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T
Reverse Opposite:
C T G A A C G T A C G T A C G T C T G A A T G C C G A T A G C T C G T A A C T G A G T C C G T A A C G T
p-value:1e-6
log p-value:-1.435e+01
Information Content per bp:1.895
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.2 +/- 26.2bp
Average Position of motif in Background43.3 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAAGTAAAT
TATGCWAATBAV--
 A C G T C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:ATGCTAAGTAAAT-
--NCTAAGTAAACA
 C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T A C G T
A C G T A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXB1/MA0845.1/Jaspar

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:ATGCTAAGTAAAT--
----TATGTAAATAT
 C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:ATGCTAAGTAAAT-
----AAAGTAAACA
 C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T A C G T
A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:5
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:ATGCTAAGTAAAT-
----WAAGTAAAYA
 C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T A C G T
A C G T A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXC1/MA0032.2/Jaspar

Match Rank:6
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ATGCTAAGTAAAT--
----TATGTAAATAT
 C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T

FOXA1/MA0148.3/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:ATGCTAAGTAAAT-----
---CAAAGTAAACANNNN
 C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

POU3F2/MA0787.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATGCTAAGTAAAT
TTATGCAAATTA---
 A C G T A C G T C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATGCTAAGTAAAT----
--NCWRWGTAAACANSV
 C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAAGTAAAT
WATGCAAATGAG--
 A C G T C G T A A C G T A C T G A G T C A C G T T C G A C G T A A T C G A G C T C G T A G T C A C G T A G A C T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T