Information for 18-CCCHCTTAGCTAGTAA (Motif 30)

T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A
Reverse Opposite:
A G C T G C A T C T G A A G T C A C G T C G T A A C T G A G T C A G C T C G T A C G T A C A T G C A T G C T A G A C T G A T C G
p-value:1e-8
log p-value:-1.986e+01
Information Content per bp:1.773
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.2 +/- 23.6bp
Average Position of motif in Background16.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCCHCTTAGCTAGTAA
-BCMATTAG-------
 T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCCHCTTAGCTAGTAA
ACNNCTAATTAGNNNN---
 A C G T A C G T A C G T T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T A C G T A C G T A C G T

PH0034.1_Gbx2/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCCHCTTAGCTAGTAA
AGCGCTAATTAGCGATT--
 A C G T A C G T A C G T T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCCHCTTAGCTAGTAA
CTTAACCACTTAAGGAT---
 A C G T A C G T A C G T A C G T T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCCHCTTAGCTAGTAA
-CCGATTGGCT-----
 T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A
A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCCHCTTAGCTAGTAA
NNCAATTANN------
 T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PH0032.1_Evx2/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCCHCTTAGCTAGTAA
ANCGCTAATTAGCGGTN--
 A C G T A C G T A C G T T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCCHCTTAGCTAGTAA--
-GANGTTAACTAGTTTNN
 T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A A C G T A C G T
A C G T T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCCHCTTAGCTAGTAA----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCCHCTTAGCTAGTAA
ACCACTTAA-------
 T A G C A G T C A G T C G A T C G T A C A C G T A C G T C T G A A C T G G T A C C G A T C G T A A C T G A G C T C G T A C T G A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T