Information for 2-CTGTCTGCTCGAC (Motif 3)

A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C
Reverse Opposite:
C T A G G A C T A G T C C T A G C G T A A T C G A T G C C G T A A C T G G T C A A G T C C G T A A C T G
p-value:1e-13
log p-value:-3.006e+01
Information Content per bp:1.930
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.6 +/- 15.3bp
Average Position of motif in Background51.1 +/- 39.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTGTCTGCTCGAC
CTGTCTGG-----
 A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTGCTCGAC
VBSYGTCTGG-----
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGTCTGCTCGAC
TWGTCTGV-----
 A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCTGCTCGAC
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTGCTCGAC
GCTGTG--------
 A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTGCTCGAC
SCTGTCARCACC--
 A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTGCTCGAC---
NSTGTTTRCWCAGBNNN
 A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C A C G T A C G T A C G T
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTGTCTGCTCGAC
-TGTCANYT----
 A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGTCTGCTCGAC
NTGTCAN------
 A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTGCTCGAC
VGCTGWCAVB-----
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A T G C A C G T A G T C A C T G C G T A A G T C
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T