Information for 6-CTAATGCAGATCT (Motif 17)

A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T
Reverse Opposite:
C G T A C T A G T C G A A C G T T A G C A C G T A C T G A T G C C G T A C G A T A C G T C G T A A C T G
p-value:1e-10
log p-value:-2.424e+01
Information Content per bp:1.779
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.9 +/- 22.0bp
Average Position of motif in Background50.7 +/- 36.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTAATGCAGATCT-
TNNATTATGCATANNTT
 A C G T A C G T A C G T A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTAATGCAGATCT
-TTATGCAAAT--
 A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T
A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTAATGCAGATCT
GCTAATCCCC----
 A C G T A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTAATGCAGATCT-
-ATATGCAAATNNN
 A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T A C G T
A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CTAATGCAGATCT
CTTTGTTATGCAAAT--
 A C G T A C G T A C G T A C G T A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTAATGCAGATCT
GCTAATCC------
 A C G T A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTAATGCAGATCT
NNTAATCCNGNCNN
 A C G T A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTAATGCAGATCT
GGGATTGCATNN--
 A C G T A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTAATGCAGATCT
-TAATCCCN----
 A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T
A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CTAATGCAGATCT
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T A C G T A G T C A C G T G T C A C G T A C G A T A T C G A G T C G T C A A T C G G T C A A G C T A G T C A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A