Information for 3-WGCCASTGSGGCATCY (Motif 3)

C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
Reverse Opposite:
C T G A A C T G G T C A C G A T A C T G A G T C A G T C A T G C A G T C T C G A A T C G A G C T A C T G A T C G A G T C C G T A
p-value:1e-11
log p-value:-2.707e+01
Information Content per bp:1.755
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.1 +/- 21.8bp
Average Position of motif in Background50.5 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:WGCCASTGSGGCATCY
TGCCCTGAGGGCA---
 C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:WGCCASTGSGGCATCY
TGCCCTGAGGGCA---
 C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:WGCCASTGSGGCATCY
TGCCCTGAGGGCA---
 C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---WGCCASTGSGGCATCY
GTAGGTCACTGGGTCA---
 A C G T A C G T A C G T C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--WGCCASTGSGGCATCY
CGTGCCAAG---------
 A C G T A C G T C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:WGCCASTGSGGCATCY
TGCCAA----------
 C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:WGCCASTGSGGCATCY
TGGCACCATGCCAA--
 C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--WGCCASTGSGGCATCY
CTTGGCAA----------
 A C G T A C G T C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:WGCCASTGSGGCATCY
AGCCAATCGG------
 C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:WGCCASTGSGGCATCY
-TCCCCTGGGGAC---
 C G A T A C T G A T G C A G T C C T G A A T G C A C G T A C T G T A C G C T A G C T A G A G T C C G T A C A G T A G T C A G C T
A C G T A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T A C G T A C G T