Information for 5-GAGTCGCAGG (Motif 16)

A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G
Reverse Opposite:
A G T C A G T C A G C T A C T G G A T C A T C G C G T A T A G C A G C T A T G C
p-value:1e-7
log p-value:-1.777e+01
Information Content per bp:1.835
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.53%
Number of Background Sequences with motif283.7
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets42.4 +/- 26.8bp
Average Position of motif in Background48.5 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GAGTCGCAGG
NTGATTGACAGN
 A C G T A C G T A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAGTCGCAGG-
TGAGTGACAGSC
 A C G T A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GAGTCGCAGG
BTGABTGACAGS
 A C G T A C G T A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GAGTCGCAGG--
AAGGKGRCGCAGGCA
 A C G T A C G T A C G T A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G A C G T A C G T
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GAGTCGCAGG
----CACAGN
 A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGTCGCAGG-----
---SDGCAGGTGCNS
 A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GAGTCGCAGG-----
-----VCAGGTRDRY
 A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GAGTCGCAGG----
----NNCAGGTGNN
 A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

SNAI2/MA0745.1/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GAGTCGCAGG---
----AACAGGTGT
 A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

TCF3/MA0522.2/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAGTCGCAGG----
----NNCAGGTGTN
 A T C G C T G A A T C G G C A T T A G C C T A G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T