Information for 5-GGAGCGCGCTAAGCCA (Motif 14)

A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A C G T A C G T C G T A T C A G A T G C A C T G A T G C A C T G A G T C A C G T A G T C G T A C
p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.908
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.4 +/- 21.3bp
Average Position of motif in Background41.4 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCGCGCTAAGCCA
CGGAGC-----------
 A C G T A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GGAGCGCGCTAAGCCA
-------GCTAATCC-
 A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:3
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GGAGCGCGCTAAGCCA
ATAAGGGCGCGCGAT------
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCGCGCTAAGCCA
NTCGCGCGCCTTNNN---
 A C G T A C G T A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:5
Score:0.50
Offset:8
Orientation:forward strand
Alignment:GGAGCGCGCTAAGCCA
--------ATAATCCC
 A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GGAGCGCGCTAAGCCA
TTGGGGGCGCCCCTAG---
 A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GGAGCGCGCTAAGCCA---
---GNNAGCTAATCCCCCN
 A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GGAGCGCGCTAAGCCA
--GCCGCGCAGTGCGT
 A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A
A C G T A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.49
Offset:11
Orientation:reverse strand
Alignment:GGAGCGCGCTAAGCCA-
-----------TGCCAA
 A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.49
Offset:9
Orientation:forward strand
Alignment:GGAGCGCGCTAAGCCA-
---------TAATCCCN
 A C T G A C T G C G T A A C T G A G T C A T C G A G T C A T C G A G T C C G A T G T C A C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G