Information for 7-TGTTATTGCCAMAAGG (Motif 9)

A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G
Reverse Opposite:
A G T C G T A C G A C T A C G T C A G T A C G T A C T G T A C G G T A C C G T A C G T A G A C T G T C A G C T A A G T C G T C A
p-value:1e-13
log p-value:-3.130e+01
Information Content per bp:1.687
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif26.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets63.2 +/- 24.9bp
Average Position of motif in Background50.9 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TGTTATTGCCAMAAGG
----GGTGCCAAGT--
 A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TGTTATTGCCAMAAGG
-----TTGCCAAG---
 A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGTTATTGCCAMAAGG-
--CAATTGCAAAAATAT
 A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G A C G T
A C G T A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

PH0061.1_Hoxb6/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGTTATTGCCAMAAGG
NNNGTAATTACNNATA--
 A C G T A C G T A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTATTGCCAMAAGG
NCNTTTGTTATTTNN------
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TGTTATTGCCAMAAGG
----CGTGCCAAG---
 A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TGTTATTGCCAMAAGG
------TGCCAA----
 A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TGTTATTGCCAMAAGG
-----ATGCCAACC--
 A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGTTATTGCCAMAAGG
-GGGATTGCATNN---
 A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G
A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGTTATTGCCAMAAGG
-BTGABTGACAGS---
 A C G T C T A G C A G T C A G T C T G A A C G T A C G T C A T G A G T C G T A C C G T A G T C A G T C A C T G A A C T G T A C G
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T