Information for 5-CCCVTCCCACTTGAGT (Motif 7)

A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T
Reverse Opposite:
G T C A A T G C A C G T G T A C C G T A C G T A A T C G A C G T A C T G A C T G A T C G C G T A A C G T C T A G C T A G T A C G
p-value:1e-13
log p-value:-3.159e+01
Information Content per bp:1.789
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.7 +/- 29.8bp
Average Position of motif in Background33.2 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.73
Offset:5
Orientation:forward strand
Alignment:CCCVTCCCACTTGAGT
-----ACCACTTGAA-
 A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.72
Offset:6
Orientation:forward strand
Alignment:CCCVTCCCACTTGAGT
------CCACTTGAA-
 A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCCVTCCCACTTGAGT--
--TAAGCCACTTGAAATT
 A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCCVTCCCACTTGAGT--
--TAAGCCACTTGAATTT
 A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T A C G T A C G T
A C G T A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCCVTCCCACTTGAGT--
--TAAGCCACTTGAAATT
 A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T A C G T A C G T
A C G T A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCCVTCCCACTTGAGT---
--ATAACCACTTGAAAATT
 A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CCCVTCCCACTTGAGT
-----NSCACTYVAV-
 A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CCCVTCCCACTTGAGT
-----RSCACTYRAG-
 A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CCCVTCCCACTTGAGT
-----ACCACTTAA--
 A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CCCVTCCCACTTGAGT
-----ACCACTTAA--
 A T G C A G T C A G T C T A C G A C G T A T G C G T A C A G T C C G T A A T G C A C G T A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T