Information for 2-WGAKCAGACAAGCCTG (Motif 4)

C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G
Reverse Opposite:
A T G C C G T A C A T G C T A G G A T C G A C T C A G T T A C G C G A T G A T C C G A T A C T G G T C A G C A T A T G C G C A T
p-value:1e-16
log p-value:-3.689e+01
Information Content per bp:1.602
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.47%
Number of Background Sequences with motif327.0
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets50.6 +/- 28.2bp
Average Position of motif in Background47.2 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:WGAKCAGACAAGCCTG--
---SCAGYCADGCATGAC
 C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:WGAKCAGACAAGCCTG---
---GCAGCCAAGCGTGACN
 C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PAX5/MA0014.2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-WGAKCAGACAAGCCTG--
GAGGGCAGCCAAGCGTGAC
 A C G T C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.61
Offset:9
Orientation:forward strand
Alignment:WGAKCAGACAAGCCTG-
---------AGGCCTNG
 C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:WGAKCAGACAAGCCTG---
--TGCAGTCATGCGTGACG
 C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G A C G T A C G T A C G T
A C G T A C G T C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX1/MA0779.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:WGAKCAGACAAGCCTG---
--NGCANTCATGCGTGACG
 C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G A C G T A C G T A C G T
A C G T A C G T C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

Nr2e3/MA0164.1/Jaspar

Match Rank:7
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:WGAKCAGACAAGCCTG
---------AAGCTTG
 C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:WGAKCAGACAAGCCTG--
---NNGGCCACGCCTTTN
 C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G A C G T A C G T
A C G T A C G T A C G T G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.55
Offset:9
Orientation:forward strand
Alignment:WGAKCAGACAAGCCTG-
---------AGGCCTAG
 C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:WGAKCAGACAAGCCTG
---BCAGACWA-----
 C G T A T A C G C G T A C A G T T G A C G C T A C T A G C G T A A T G C G T C A C T G A C T A G G A T C G T A C C G A T A T C G
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T