Information for 11-AGCAAATTCCAAGKGA (Motif 17)

C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A
Reverse Opposite:
A G C T A G T C G T C A G A T C G A C T A C G T A C T G A C T G C G T A C T G A C G A T A C G T C G A T C A T G A T G C C G A T
p-value:1e-11
log p-value:-2.649e+01
Information Content per bp:1.729
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.0 +/- 28.3bp
Average Position of motif in Background40.1 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGCAAATTCCAAGKGA
-GGAAATTCCC-----
 C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGCAAATTCCAAGKGA
-GGAAATTCCC-----
 C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGCAAATTCCAAGKGA
---GCATTCCAGN---
 C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A
A C G T A C G T A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----AGCAAATTCCAAGKGA
TTGTATGCAAATTAGA-----
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----AGCAAATTCCAAGKGA
TTGTATGCAAATTAGA-----
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----AGCAAATTCCAAGKGA
TTGTATGCAAATTAGA-----
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A A C G T A C G T A C G T A C G T A C G T

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCAAATTCCAAGKGA----
AGTAAACAAAAAAGAACANN
 C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A A C G T A C G T A C G T A C G T
C G T A C T A G G A C T G T C A G T C A C G T A A G T C C G T A T C G A T C G A T C G A C G T A C T G A C T A G G C T A C G T A T A G C C G T A C G A T C G T A

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGCAAATTCCAAGKGA
ATATGCAAATNNN------
 A C G T A C G T A C G T C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGCAAATTCCAAGKGA
TTATGCAAAT---------
 A C G T A C G T A C G T C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGCAAATTCCAAGKGA
-GGAAANCCCC-----
 C G T A A T C G G A T C C G T A C G T A C G T A A G C T C G A T G T A C G T A C G T C A C G T A C A T G A C G T T C A G C T G A
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T A C G T