Information for 1-VAAACMKGTTTDDCHD (Motif 1)

T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A
Reverse Opposite:
G A C T C A G T A T C G G A C T G T A C C G T A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G A C T A G C T
p-value:1e-243
log p-value:-5.604e+02
Information Content per bp:1.522
Number of Target Sequences with motif368.0
Percentage of Target Sequences with motif49.80%
Number of Background Sequences with motif2760.4
Percentage of Background Sequences with motif5.81%
Average Position of motif in Targets51.5 +/- 17.5bp
Average Position of motif in Background49.9 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:1
Score:0.85
Offset:1
Orientation:forward strand
Alignment:VAAACMKGTTTDDCHD-----
-AAACYKGTTWDACMRGTTTB
 T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C T G A A T G C G A T C C A T G A C T G G A C T G A C T G C A T C G T A C G T A A G T C G T A C C T G A A T C G G C A T G A C T G A C T A G C T

GRHL1/MA0647.1/Jaspar

Match Rank:2
Score:0.83
Offset:0
Orientation:forward strand
Alignment:VAAACMKGTTTDDCHD
AAAACCGGTTTT----
 T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A
G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T A C G T A C G T A C G T A C G T

TFCP2/MA0145.3/Jaspar

Match Rank:3
Score:0.82
Offset:1
Orientation:forward strand
Alignment:VAAACMKGTTTDDCHD
-AAACCGGTTT-----
 T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A
A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T A C G T A C G T A C G T A C G T A C G T

PH0085.1_Irx4/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--VAAACMKGTTTDDCHD
AATATACATGTAAAACA-
 A C G T A C G T T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A A C G T

PH0086.1_Irx5/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--VAAACMKGTTTDDCHD
AATATACATGTAAAATT-
 A C G T A C G T T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--VAAACMKGTTTDDCHD
AAAATACATGTAATACT-
 A C G T A C G T T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:VAAACMKGTTTDDCHD
-NCACCTGTN------
 T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A
A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--VAAACMKGTTTDDCHD
AATATACATGTAATATA-
 A C G T A C G T T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--VAAACMKGTTTDDCHD
TAAATACATGTAAAATT-
 A C G T A C G T T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:-10
Orientation:forward strand
Alignment:----------VAAACMKGTTTDDCHD
NAAACCGGTTNNAACCGGTT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T G A C G T A A G T C G T A C C A T G A C T G G C A T G A C T G C A T C A T G C T G A T A G C G T C A C T G A
T G A C T C G A C T G A C T G A A T G C G A T C C T A G T A C G G A C T G A C T G A T C T C G A C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T