Information for 1-GACATTCGATTAT (Motif 2)

A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T
Reverse Opposite:
G T C A A C G T C T G A C G T A A C G T A T G C A C T G C G T A C G T A A C G T A C T G A C G T A G T C
p-value:1e-12
log p-value:-2.961e+01
Information Content per bp:1.931
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.7 +/- 25.6bp
Average Position of motif in Background79.5 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GACATTCGATTAT--
-AAAAACCATTAAGG
 A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T A C G T A C G T
A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PAX7/MA0680.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GACATTCGATTAT
--TAATCGATTA-
 A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T
A C G T A C G T C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A A C G T

PAX3/MA0780.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GACATTCGATTAT
--TAATCGATTA-
 A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T
A C G T A C G T C G A T T C G A G T C A A G C T A G T C T C A G C T G A A C G T G A C T G C T A A C G T

PROP1/MA0715.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GACATTCGATTAT
-TAATTAAATTA-
 A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T
A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GACATTCGATTAT
-TAATYNRATTAR
 A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T
A C G T G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

Phox2b/MA0681.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GACATTCGATTAT
-TAATTAAATTA-
 A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T
A C G T G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A A C G T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GACATTCGATTAT
GTAATCDGATTA-
 A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GACATTCGATTAT
-TAATTAAATTA-
 A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T
A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GACATTCGATTAT
-ACTTTCGTTTCT
 A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T
A C G T T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GACATTCGATTAT
-TAATTNVATTAN
 A C T G C G T A G T A C C G T A A C G T A C G T G T A C A T C G C G T A C G A T A G C T C G T A A C G T
A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G