Information for 3-GAGTATATCC (Motif 11)

A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T C G T A A C G T C G T A A G T C A C G T A G T C
p-value:1e-6
log p-value:-1.538e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.7 +/- 13.8bp
Average Position of motif in Background30.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GAGTATATCC---
ANNNGGATATATCCNNN
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAGTATATCC--
-AAGATATCCTT
 A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C A C G T A C G T
A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGTATATCC------
GATAACATCCTAGTAG
 A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAGTATATCC
GGGAATTTCC
 A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGTATATCC--
--GHATATKCAT
 A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

SPDEF/MA0686.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GAGTATATCC----
---TACATCCGGGT
 A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GAGTATATCC------
NDBAGATRWTATCTVNNNNN
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C A G T A T G C C G T A A C T G C G T A A C G T T C G A G C T A G A C T C G T A A C G T A G T C C G A T T A C G G C A T A G C T G A T C G A C T G A C T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGTATATCC----
--NNAYTTCCTGHN
 A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G T C C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G G A C T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGTATATCC
GGGGATTTCC
 A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAGTATATCC------
ATAGTTAATCCCCCNNA
 A C G T A C T G C G T A A C T G A C G T C G T A A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A