Information for 19-TTAGATCTACACTGAT (Motif 28)

A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T
Reverse Opposite:
C G T A A C G T G T A C G C T A C T A G A C G T A C T G C A G T C T G A C T A G C T G A C G A T A G T C A C G T G T C A C T G A
p-value:1e-9
log p-value:-2.293e+01
Information Content per bp:1.703
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif21.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets54.4 +/- 19.7bp
Average Position of motif in Background44.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0004.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.50
Offset:3
Orientation:forward strand
Alignment:TTAGATCTACACTGAT----
---CATAACCACTTAACAAC
 A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.49
Offset:7
Orientation:forward strand
Alignment:TTAGATCTACACTGAT
-------ACCACTTAA
 A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.48
Offset:7
Orientation:forward strand
Alignment:TTAGATCTACACTGAT
-------ACCACTTAA
 A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

PB0198.1_Zfp128_2/Jaspar

Match Rank:4
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-TTAGATCTACACTGAT
NNTATANATATACN---
 A C G T A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T
A T C G A C T G G C A T C T G A G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G T A C G T C A A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:5
Score:0.47
Offset:0
Orientation:forward strand
Alignment:TTAGATCTACACTGAT--
YTAATTRAWWCCAGATGT
 A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.46
Offset:-6
Orientation:reverse strand
Alignment:------TTAGATCTACACTGAT
NNTTCCTTTGATCTANA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A A C G T A C G T A C G T A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.46
Offset:10
Orientation:reverse strand
Alignment:TTAGATCTACACTGAT----
----------ATTGATTYND
 A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

PH0085.1_Irx4/Jaspar

Match Rank:8
Score:0.46
Offset:-4
Orientation:reverse strand
Alignment:----TTAGATCTACACTGAT
NNTTTTACATGTANNNT---
 A C G T A C G T A C G T A C G T A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T A C G T A C G T A C G T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:9
Score:0.46
Offset:0
Orientation:forward strand
Alignment:TTAGATCTACACTGAT
CAAAATCGAAACTAA-
 A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T
T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:10
Score:0.46
Offset:-4
Orientation:reverse strand
Alignment:----TTAGATCTACACTGAT
NNTATTACATGTANNNT---
 A C G T A C G T A C G T A C G T A G C T A C G T G T C A T C A G C G T A A G C T A G T C G A C T G T C A T G A C G T C A A G T C C A G T A C T G G T C A A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T A C G T A C G T