Information for 2-GCTGCCMCCTGGTGGC (Motif 3)

C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C
Reverse Opposite:
C T A G A T G C A G T C C G T A A T G C A T G C C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T C G G T A C
p-value:1e-30
log p-value:-7.050e+01
Information Content per bp:1.751
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.18%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets49.8 +/- 23.9bp
Average Position of motif in Background69.6 +/- 10.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--GCTGCCMCCTGGTGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCCMCCTGGTGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----GCTGCCMCCTGGTGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCTGCCMCCTGGTGGC
---GCCATCTGTT---
 C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C
A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCTGCCMCCTGGTGGC-
--GGCCYCCTGCTGDGH
 C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCTGCCMCCTGGTGGC
----CCCCCTGCTGTG
 C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCTGCCMCCTGGTGGC
-NTGCCCANNGGTNA-
 C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C
A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCTGCCMCCTGGTGGC
---GCCAGCTGBTNB-
 C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C
A C G T A C G T A C G T T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCTGCCMCCTGGTGGC
---ACCATCTGTT---
 C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C
A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCTGCCMCCTGGTGGC
---NNCACCTGNN---
 C A T G T A G C A G C T A C T G G T A C G T A C T G C A A G T C A G T C C G A T T A C G A T C G C G A T A C T G A T C G G A T C
A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T