Information for 22-TTTGGATGCTAAT (Motif 28)

A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C A G T C C G T A C G T A C G T A
p-value:1e-7
log p-value:-1.790e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets36.7 +/- 19.3bp
Average Position of motif in Background58.6 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou2f3/MA0627.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTTGGATGCTAAT----
-TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTTGGATGCTAAT----
-TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.70
Offset:4
Orientation:forward strand
Alignment:TTTGGATGCTAAT---
----TATGCWAATBAV
 A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.68
Offset:4
Orientation:forward strand
Alignment:TTTGGATGCTAAT---
----WATGCAAATGAG
 A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TTTGGATGCTAAT----
-TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTTGGATGCTAAT
CCATTGTATGCAAAT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGATGCTAAT
CATTGTTATGCAAAT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

POU3F4/MA0789.1/Jaspar

Match Rank:8
Score:0.66
Offset:4
Orientation:forward strand
Alignment:TTTGGATGCTAAT
----TATGCAAAT
 A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTTGGATGCTAAT
----TATGCAAAT
 A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTTGGATGCTAAT
CTTTGTTATGCAAAT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T