Information for 19-CAATATGCTT (Motif 27)

T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T
Reverse Opposite:
C G T A C G T A A C T G A G T C C G T A A C G T C G T A A C G T A G C T A C T G
p-value:1e-7
log p-value:-1.838e+01
Information Content per bp:1.848
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets43.7 +/- 27.6bp
Average Position of motif in Background42.0 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CAATATGCTT
AAGATATCCTT
 A C G T T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CAATATGCTT
GAATATTCAT
 T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

BHLHE23/MA0817.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAATATGCTT
NAACATATGTTT
 A C G T A C G T T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T

Neurog1/MA0623.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAATATGCTT
ACCATATGGT-
 A C G T T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T
C T G A T A G C T G A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAATATGCTT-----
TNNATTATGCATANNTT
 A C G T A C G T T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

OLIG3/MA0827.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAATATGCTT
ACCATATGTT-
 A C G T T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T
T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A C G T G A C T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAATATGCTT
ACCATATGTT-
 A C G T T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T
T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAATATGCTT
GHATATKCAT
 T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

OLIG2/MA0678.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAATATGCTT
ACCATATGGT-
 A C G T T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T
C T G A T G A C T G A C C T G A A C G T T G C A G A C T C A T G A C T G G A C T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAATATGCTT---
ATGAATATTCATGAG
 A C G T A C G T T A G C C T G A C G T A G A C T C G T A A C G T T A C G A G T C G A C T A C G T A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G