Information for 18-GAGCGTCTAA (Motif 26)

T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A
Reverse Opposite:
A C G T G A C T C T G A T C A G T G C A T A G C C A T G A T G C G A C T A T G C
p-value:1e-8
log p-value:-2.026e+01
Information Content per bp:1.543
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets51.2 +/- 22.1bp
Average Position of motif in Background46.7 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAGCGTCTAA
CTTGAGTGGCT--
 A C G T A C G T A C G T T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGTCTAA
CGGAGC------
 A C G T A C G T T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGCGTCTAA
CAGCC-----
 T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGTCTAA
TTGAGTGSTT--
 A C G T A C G T T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCGTCTAA--
NNNTNGGGCGTATNNTN
 A C G T A C G T A C G T A C G T A C G T T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGCGTCTAA--
AGGTCTCTAACC
 T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A A C G T A C G T
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGCGTCTAA
VBSYGTCTGG
 T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GAGCGTCTAA
--TWGTCTGV
 T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------GAGCGTCTAA
TTGACCGAGAATTCC-
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GAGCGTCTAA
CTYRAGTGSY---
 A C G T A C G T A C G T T A C G C T G A T A C G G T A C A T C G A C G T A G T C G A C T C T G A T G C A
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T