Information for 13-AGGACAGMAC (Motif 17)

G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C
Reverse Opposite:
C T A G A G C T A C G T A G T C A C G T A C T G A C G T A T G C A G T C A C G T
p-value:1e-10
log p-value:-2.441e+01
Information Content per bp:1.778
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets50.8 +/- 29.6bp
Average Position of motif in Background59.3 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:AGGACAGMAC
--CACAGN--
 G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGACAGMAC
TRAGGTCA----
 A C G T A C G T G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGGACAGMAC
CAAAGGTCAG---
 A C G T A C G T A C G T G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGGACAGMAC
CCAGGAACAG---
 A C G T A C G T A C G T G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGACAGMAC
TTGACAGC--
 G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGACAGMAC
ATGCCAGACN
 G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGACAGMAC
AAGGTCAC---
 A C G T G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGACAGMAC
TTGACAG---
 G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGGACAGMAC--
ARGAGGMCAAAATGW
 A C G T A C G T A C G T G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C A C G T A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGACAGMAC
AGGTCA----
 G T C A C T A G A T C G G T C A A G T C C G T A A C T G G T C A C T G A A G T C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T