Information for 3-CATCTGACASCCA (Motif 6)

A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A T G C A C G T T A C G C G A T A G T C C G T A A C T G T G C A C G A T A C T G
p-value:1e-13
log p-value:-3.174e+01
Information Content per bp:1.843
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.7 +/- 25.1bp
Average Position of motif in Background41.9 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CATCTGACASCCA------
VCAKCTGGNNNCCAGMTGBN
 A C G T A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CATCTGACASCCA
-VGCTGWCAVB--
 A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CATCTGACASCCA
NVCAGCTGBBNN---
 A C G T A C G T A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CATCTGACASCCA
TGCAGCTGTCCCT--
 A C G T A C G T A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CATCTGACASCCA
-GSCTGTCACTCA
 A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CATCTGACASCCA
HCAGCTGDTN----
 A C G T A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CATCTGACASCCA---
ANANNTGATACCCNATN
 A C G T A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A A C G T A C G T A C G T
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

PH0164.1_Six4/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CATCTGACASCCA---
ATAAATGACACCTATCA
 A C G T A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CATCTGACASCCA-
--NCTGTCAATCAN
 A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CATCTGACASCCA
ANCAGCTG-------
 A C G T A C G T A G T C C G T A A C G T A G T C A C G T A C T G C G T A A G T C C G T A A T C G A G T C A G T C C G T A
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T