Information for 9-CGTTTCTAKG (Motif 33)

T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G
Reverse Opposite:
G T A C G T A C A C G T C G T A A C T G T G C A G T C A C G T A G T A C A T C G
p-value:1e-8
log p-value:-2.013e+01
Information Content per bp:1.539
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif56.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets56.3 +/- 28.0bp
Average Position of motif in Background49.3 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)3.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CGTTTCTAKG---
NCCGTTGCTANGNGN
 A C G T A C G T T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CGTTTCTAKG---
NNCGTTGCTATGGNN
 A C G T A C G T T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CGTTTCTAKG-
CTGTTGCTAGGS
 A C G T T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------CGTTTCTAKG-------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGTTTCTAKG-----
-GTTGCCATGGNAAC
 T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CGTTTCTAKG---
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A C G T T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGTTTCTAKG-----
KGTTGCTAGGMAACA
 T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G A C G T A C G T A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGTTTCTAKG
TGGTTTCAGT-
 A C G T T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G
G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGTTTCTAKG-
NTGTTTAYATWW
 A C G T T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G A C G T
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A

PH0044.1_Homez/Jaspar

Match Rank:10
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CGTTTCTAKG
AAAACATCGTTTTTAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T C A G T A C G T T G A C G C A T T G C A C A T G C A T G
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G