Information for 7-TCAGSTCMSWGTS (Motif 23)

A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C
Reverse Opposite:
A T C G C G T A A G T C G C A T A T G C C A G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A
p-value:1e-10
log p-value:-2.346e+01
Information Content per bp:1.841
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.3 +/- 23.1bp
Average Position of motif in Background78.5 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCAGSTCMSWGTS
TRAGGTCA-----
 A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCAGSTCMSWGTS-----
-CAGGTCACCGTGACCTT
 A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCAGSTCMSWGTS---
-NAGGTCACNNTGACC
 A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C A C G T A C G T A C G T
A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TCAGSTCMSWGTS
--AGGTCA-----
 A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCAGSTCMSWGTS----
--AGGTCACCCTGACCT
 A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCAGSTCMSWGTS-
--AGGTCAAGGTCA
 A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TCAGSTCMSWGTS-
--AGGTCAAGGTCA
 A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TCAGSTCMSWGTS
-AAGGTCAC----
 A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCAGSTCMSWGTS
ATCACCCCAT----
 A C G T A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C
C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCAGSTCMSWGTS
-CAGGTGAGG---
 A C G T A G T C C G T A A C T G A T C G C G A T A G T C G T C A A T C G C G T A A C T G A C G T A T G C
A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T