Information for 3-AAAAKACTYCYTGGCA (Motif 2)

C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A
Reverse Opposite:
C G A T C T A G A G T C G T A C C T G A C T G A C A T G C T G A C G T A A C T G A C G T T G A C A G C T A G C T A C G T C G A T
p-value:1e-16
log p-value:-3.788e+01
Information Content per bp:1.743
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.7 +/- 16.6bp
Average Position of motif in Background25.8 +/- 13.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.61
Offset:9
Orientation:reverse strand
Alignment:AAAAKACTYCYTGGCA--
---------NTTGGCANN
 C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.61
Offset:10
Orientation:forward strand
Alignment:AAAAKACTYCYTGGCA
----------TTGGCA
 C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:AAAAKACTYCYTGGCA--
--------NNTTGGCANN
 C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:AAAAKACTYCYTGGCA-
---------CTTGGCAA
 C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:AAAAKACTYCYTGGCA---
-------TGATTGGCTANN
 C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AAAAKACTYCYTGGCA
TACGAGACTCCTCTAAC
 A C G T C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:AAAAKACTYCYTGGCA
------CCGATTGGCT
 C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:8
Score:0.50
Offset:4
Orientation:forward strand
Alignment:AAAAKACTYCYTGGCA----
----CAATCACTGGCAGAAT
 C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

PROX1/MA0794.1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AAAAKACTYCYTGGCA
-CAAGACGCCTTA---
 C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A
A C G T A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:AAAAKACTYCYTGGCA-----
------CTGATTGGTCNATTT
 C G T A G T C A C T G A C T G A A C T G C G T A G T A C C G A T A G C T G T A C G A C T A G C T A C T G T C A G A G T C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T