Information for 5-TCAGGGCAAG (Motif 5)

G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G
Reverse Opposite:
T G A C C A G T C G A T A C T G G T A C A G T C A T G C A G C T A C T G C T G A
p-value:1e-11
log p-value:-2.606e+01
Information Content per bp:1.825
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif174.8
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets59.0 +/- 27.0bp
Average Position of motif in Background45.8 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TCAGGGCAAG
TNNGGGCAG-
 G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TCAGGGCAAG---
--AAGGCAAGTGT
 G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCAGGGCAAG
WDNCTGGGCA--
 A C G T A C G T G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCAGGGCAAG
TRAGGTCA--
 G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TCAGGGCAAG----
--AGGTCAAGGTCA
 G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TCAGGGCAAG
GCCTCAGGGCAT-
 A C G T A C G T A C G T G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TCAGGGCAAG----
--AGGTCAAGGTCA
 G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TCAGGGCAAG
--AGGTCA--
 G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TCAGGGCAAG-
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A C G T G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TCAGGGCAAG-
ATGCCCGGGCATGT
 A C G T A C G T A C G T G A C T A G T C C T G A T A C G A C T G C A T G A G T C G C T A G T C A A C T G A C G T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T